Protein–RNA interactions for Protein: Q9GZS1

POLR1E, DNA-directed RNA polymerase I subunit RPA49, humanhuman

Known RBP Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1EQ9GZS1 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
POLR1EQ9GZS1 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.66■□□□□ 0.26
POLR1EQ9GZS1 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
POLR1EQ9GZS1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.66■□□□□ 0.26
POLR1EQ9GZS1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.66■□□□□ 0.26
POLR1EQ9GZS1 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 REXO1L8P-201ENST00000604378 1897 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC211486.1-202ENST00000416371 468 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SPCS2P4-201ENST00000436160 681 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC211476.1-201ENST00000503899 468 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 IGHV3-62-201ENST00000520057 340 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AL138918.1-201ENST00000568306 659 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC023511.2-201ENST00000618803 211 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC105339.1-204ENST00000636249 355 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 AC006449.6-201ENST00000612330 2296 ntBASIC16.65■□□□□ 0.26
POLR1EQ9GZS1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
POLR1EQ9GZS1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
POLR1EQ9GZS1 MTHFR-217ENST00000641820 1569 ntBASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 KRT8P23-201ENST00000560090 1207 ntBASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 CYP2T1P-202ENST00000641596 2535 ntBASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 AL592424.1-201ENST00000563624 1536 ntBASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.64■□□□□ 0.25
POLR1EQ9GZS1 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.63■□□□□ 0.25
POLR1EQ9GZS1 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms