Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AC087163.2-201ENST00000457299 853 ntBASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AC074051.2-201ENST00000565115 352 ntBASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 MIR5100-201ENST00000579544 119 ntBASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AP002414.4-201ENST00000589764 1148 ntBASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AF228730.7-201ENST00000641842 219 ntBASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28BQ9BUN5 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 AP005117.1-201ENST00000584346 1413 ntBASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 AL031133.1-201ENST00000406807 723 ntBASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 LINC00265-3P-201ENST00000447588 903 ntBASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 AL022326.1-202ENST00000641533 845 ntBASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC28BQ9BUN5 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms