Protein–RNA interactions for Protein: Q99732

LITAF, Lipopolysaccharide-induced tumor necrosis factor-alpha factor, humanhuman

Predictions only

Length 161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LITAFQ99732 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 GXYLT1P3-201ENST00000453058 1193 ntBASIC10.95□□□□□ -0.66
LITAFQ99732 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC10.95□□□□□ -0.66
LITAFQ99732 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC10.95□□□□□ -0.66
LITAFQ99732 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC10.95□□□□□ -0.66
LITAFQ99732 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
LITAFQ99732 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
LITAFQ99732 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LITAFQ99732 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC10.94□□□□□ -0.66
LITAFQ99732 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 FGD5P1-202ENST00000614866 2498 ntBASIC10.94□□□□□ -0.66
LITAFQ99732 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC10.94□□□□□ -0.66
LITAFQ99732 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 SPDYE15P-201ENST00000424157 909 ntBASIC10.94□□□□□ -0.66
LITAFQ99732 MEG3-211ENST00000452514 461 ntTSL 3 BASIC10.94□□□□□ -0.66
LITAFQ99732 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC10.94□□□□□ -0.66
LITAFQ99732 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC10.94□□□□□ -0.66
LITAFQ99732 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC10.94□□□□□ -0.66
LITAFQ99732 SPEG-225ENST00000617028 815 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 AL590326.2-201ENST00000625139 305 ntBASIC10.94□□□□□ -0.66
LITAFQ99732 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 AC148477.5-201ENST00000625164 1645 ntBASIC10.94□□□□□ -0.66
LITAFQ99732 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 AC092127.1-201ENST00000567093 3455 ntBASIC10.94□□□□□ -0.66
LITAFQ99732 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC10.94□□□□□ -0.66
LITAFQ99732 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC10.94□□□□□ -0.66
LITAFQ99732 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LITAFQ99732 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LITAFQ99732 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LITAFQ99732 CYP2D8P-201ENST00000433633 1490 ntBASIC10.93□□□□□ -0.66
LITAFQ99732 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
LITAFQ99732 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LITAFQ99732 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC10.93□□□□□ -0.66
LITAFQ99732 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LITAFQ99732 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms