Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 NMU-205ENST00000511469 756 ntTSL 3 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 AC136632.2-201ENST00000512891 861 ntBASIC12.37□□□□□ -0.43
LINC00477Q96M19 OR7E14P-202ENST00000530490 1290 ntBASIC12.37□□□□□ -0.43
LINC00477Q96M19 AC107918.2-201ENST00000530817 355 ntBASIC12.37□□□□□ -0.43
LINC00477Q96M19 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 CICP6-201ENST00000457191 2729 ntBASIC12.37□□□□□ -0.43
LINC00477Q96M19 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AC073648.2-201ENST00000510116 352 ntBASIC12.36□□□□□ -0.43
LINC00477Q96M19 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AL603832.2-201ENST00000566195 2125 ntBASIC12.36□□□□□ -0.43
LINC00477Q96M19 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AC008667.4-201ENST00000607370 168 ntBASIC12.36□□□□□ -0.43
LINC00477Q96M19 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 AC068418.2-201ENST00000577309 3703 ntBASIC12.36□□□□□ -0.43
LINC00477Q96M19 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
LINC00477Q96M19 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00477Q96M19 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms