Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 ARSEP1-201ENST00000420443 635 ntBASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 AC097493.3-201ENST00000509725 367 ntBASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 KRT8P23-201ENST00000560090 1207 ntBASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 AC026150.2-201ENST00000564693 1156 ntBASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 AC008677.1-201ENST00000519230 1561 ntBASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.36■□□□□ 0.69
NKX2-3Q8TAU0 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 SERBP1P5-201ENST00000510079 1181 ntBASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 AP3S2-216ENST00000617003 1561 ntBASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX2-3Q8TAU0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 GPR53P-205ENST00000457298 1084 ntBASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 AC020765.3-201ENST00000613051 740 ntBASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 AL589702.1-201ENST00000641229 1509 ntBASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-3Q8TAU0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
NKX2-3Q8TAU0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms