Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 HNRNPRP1-201ENST00000453465 1695 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LINC00896-202ENST00000609602 2128 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC055876.3-201ENST00000431496 288 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL512356.2-201ENST00000546955 174 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC138649.4-201ENST00000612222 287 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AF228730.6-201ENST00000641497 218 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC084121.3-201ENST00000641716 218 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC105233.6-201ENST00000642093 218 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC007686.3-201ENST00000619017 3487 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AP3S2-216ENST00000617003 1561 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms