Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 KRT8P23-201ENST00000560090 1207 ntBASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 AL161645.1-201ENST00000622716 1255 ntBASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PIN1P1-201ENST00000412108 996 ntBASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 MIR6752-201ENST00000618442 71 ntBASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 AC079416.2-201ENST00000625035 1193 ntBASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SH3RF1Q7Z6J0 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
SH3RF1Q7Z6J0 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AC022494.1-201ENST00000466044 728 ntBASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 ALG1L8P-201ENST00000533887 760 ntBASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms