Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 EEF1DP4-201ENST00000446006 880 ntBASIC21.98■■□□□ 1.11
NPHP3Q7Z494 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP3Q7Z494 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AL390961.4-201ENST00000623958 2535 ntBASIC21.97■■□□□ 1.11
NPHP3Q7Z494 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AC007613.1-201ENST00000572811 2597 ntBASIC21.97■■□□□ 1.11
NPHP3Q7Z494 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AGER-203ENST00000375065 665 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AC134915.1-201ENST00000426461 574 ntBASIC21.97■■□□□ 1.11
NPHP3Q7Z494 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AC009486.1-201ENST00000569860 813 ntBASIC21.97■■□□□ 1.11
NPHP3Q7Z494 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
NPHP3Q7Z494 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 U82695.1-201ENST00000635752 1889 ntBASIC21.96■■□□□ 1.11
NPHP3Q7Z494 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 RPL13AP25-201ENST00000484130 612 ntBASIC21.96■■□□□ 1.11
NPHP3Q7Z494 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 KRT90P-201ENST00000549264 1064 ntBASIC21.96■■□□□ 1.11
NPHP3Q7Z494 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 RN7SL190P-201ENST00000582519 257 ntBASIC21.96■■□□□ 1.11
NPHP3Q7Z494 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC21.96■■□□□ 1.11
NPHP3Q7Z494 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.95■■□□□ 1.11
NPHP3Q7Z494 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC21.95■■□□□ 1.11
NPHP3Q7Z494 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
NPHP3Q7Z494 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
NPHP3Q7Z494 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 BAATP1-201ENST00000412284 1225 ntBASIC21.95■■□□□ 1.1
NPHP3Q7Z494 AC026954.1-201ENST00000429771 1293 ntBASIC21.95■■□□□ 1.1
NPHP3Q7Z494 AC016694.1-201ENST00000434179 700 ntBASIC21.95■■□□□ 1.1
NPHP3Q7Z494 AC012441.1-201ENST00000446669 685 ntBASIC21.95■■□□□ 1.1
NPHP3Q7Z494 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
NPHP3Q7Z494 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms