Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
ABCA4P78363 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.12□□□□□ -0.15
ABCA4P78363 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.12□□□□□ -0.15
ABCA4P78363 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.12□□□□□ -0.15
ABCA4P78363 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ABCA4P78363 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
ABCA4P78363 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.12□□□□□ -0.15
ABCA4P78363 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
ABCA4P78363 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
ABCA4P78363 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
ABCA4P78363 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 AC087499.5-201ENST00000452760 1342 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.11□□□□□ -0.15
ABCA4P78363 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
ABCA4P78363 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.11□□□□□ -0.15
ABCA4P78363 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 SNX33P1-201ENST00000592116 1762 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 AL035456.1-201ENST00000456064 1369 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 AL603756.1-201ENST00000606511 2163 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 AL023806.1-201ENST00000603994 1649 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 AC006277.1-201ENST00000624348 1610 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 AC098850.1-201ENST00000419919 790 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
ABCA4P78363 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 AC105021.1-202ENST00000570572 669 ntBASIC14.11□□□□□ -0.15
ABCA4P78363 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.11□□□□□ -0.15
ABCA4P78363 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ABCA4P78363 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 HLA-DPB2-205ENST00000435074 1188 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.1□□□□□ -0.15
ABCA4P78363 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
ABCA4P78363 AL512361.1-201ENST00000554200 418 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 AC140912.1-201ENST00000577171 1054 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 AC008494.3-201ENST00000606615 944 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms