Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A4P53420 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A4P53420 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A4P53420 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL4A4P53420 MEP1AP4-201ENST00000423244 1087 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A4P53420 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 AC025048.3-201ENST00000590609 569 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 AC005702.4-201ENST00000618393 416 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.29■□□□□ 0.36
COL4A4P53420 AL033527.5-201ENST00000641382 801 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A4P53420 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL4A4P53420 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 CDC14C-201ENST00000428251 1719 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL4A4P53420 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A4P53420 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A4P53420 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.29■□□□□ 0.36
COL4A4P53420 SDHAP3-202ENST00000515467 728 ntBASIC17.29■□□□□ 0.36
COL4A4P53420 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A4P53420 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A4P53420 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A4P53420 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A4P53420 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL4A4P53420 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
COL4A4P53420 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 AC011676.5-201ENST00000624864 2660 ntBASIC17.28■□□□□ 0.36
COL4A4P53420 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.28■□□□□ 0.36
COL4A4P53420 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A4P53420 AC005229.1-201ENST00000392885 409 ntBASIC17.28■□□□□ 0.36
COL4A4P53420 SPDYE17-201ENST00000412399 783 ntBASIC17.28■□□□□ 0.36
COL4A4P53420 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.28■□□□□ 0.36
COL4A4P53420 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 GOLGA2P4-201ENST00000441462 777 ntBASIC17.28■□□□□ 0.36
COL4A4P53420 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.28■□□□□ 0.36
COL4A4P53420 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A4P53420 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A4P53420 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL4A4P53420 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL4A4P53420 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms