Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 BAATP1-201ENST00000412284 1225 ntBASIC21.25■□□□□ 0.99
COL18A1P39060 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 RHOXF1P1-202ENST00000635473 501 ntBASIC21.25■□□□□ 0.99
COL18A1P39060 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
COL18A1P39060 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.24■□□□□ 0.99
COL18A1P39060 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 AGER-214ENST00000538695 487 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.24■□□□□ 0.99
COL18A1P39060 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
COL18A1P39060 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 REXO1L8P-201ENST00000604378 1897 ntBASIC21.24■□□□□ 0.99
COL18A1P39060 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL18A1P39060 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.24■□□□□ 0.99
COL18A1P39060 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COL18A1P39060 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC21.23■□□□□ 0.99
COL18A1P39060 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC21.23■□□□□ 0.99
COL18A1P39060 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 AC243960.2-201ENST00000600996 747 ntBASIC21.23■□□□□ 0.99
COL18A1P39060 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.23■□□□□ 0.99
COL18A1P39060 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.23■□□□□ 0.99
COL18A1P39060 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL18A1P39060 AC022137.2-201ENST00000503482 481 ntBASIC21.23■□□□□ 0.99
COL18A1P39060 FAM86HP-204ENST00000513466 959 ntBASIC21.23■□□□□ 0.99
COL18A1P39060 AC068587.10-201ENST00000641210 219 ntBASIC21.23■□□□□ 0.99
COL18A1P39060 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL18A1P39060 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL18A1P39060 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL18A1P39060 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.22■□□□□ 0.99
COL18A1P39060 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 CNN2P8-201ENST00000421872 913 ntBASIC21.22■□□□□ 0.99
COL18A1P39060 RPL13AP20-201ENST00000459725 609 ntBASIC21.22■□□□□ 0.99
COL18A1P39060 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 POU5F1P6-201ENST00000466990 990 ntBASIC21.22■□□□□ 0.99
COL18A1P39060 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC21.22■□□□□ 0.99
COL18A1P39060 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL18A1P39060 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC21.22■□□□□ 0.99
COL18A1P39060 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC21.22■□□□□ 0.99
COL18A1P39060 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.22■□□□□ 0.99
COL18A1P39060 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL18A1P39060 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL18A1P39060 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL18A1P39060 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL18A1P39060 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 TPI1-206ENST00000488464 791 ntTSL 5 BASIC21.21■□□□□ 0.99
COL18A1P39060 ENPP7P5-201ENST00000541031 1031 ntBASIC21.21■□□□□ 0.99
COL18A1P39060 RN7SL560P-201ENST00000577943 264 ntBASIC21.21■□□□□ 0.99
COL18A1P39060 AC107373.2-201ENST00000607735 490 ntBASIC21.21■□□□□ 0.99
COL18A1P39060 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms