Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.43■□□□□ 0.54
CIITAP33076 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 AL353705.2-201ENST00000428243 662 ntBASIC18.43■□□□□ 0.54
CIITAP33076 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 KLF2P3-201ENST00000451977 1087 ntBASIC18.43■□□□□ 0.54
CIITAP33076 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.43■□□□□ 0.54
CIITAP33076 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.43■□□□□ 0.54
CIITAP33076 AC140878.1-201ENST00000565277 250 ntBASIC18.43■□□□□ 0.54
CIITAP33076 AC003101.2-201ENST00000612557 442 ntBASIC18.43■□□□□ 0.54
CIITAP33076 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.43■□□□□ 0.54
CIITAP33076 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.43■□□□□ 0.54
CIITAP33076 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CIITAP33076 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
CIITAP33076 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CIITAP33076 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CIITAP33076 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.42■□□□□ 0.54
CIITAP33076 AC245100.5-201ENST00000452108 331 ntBASIC18.42■□□□□ 0.54
CIITAP33076 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.42■□□□□ 0.54
CIITAP33076 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.42■□□□□ 0.54
CIITAP33076 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 AC105021.1-202ENST00000570572 669 ntBASIC18.42■□□□□ 0.54
CIITAP33076 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.42■□□□□ 0.54
CIITAP33076 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.42■□□□□ 0.54
CIITAP33076 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 AL035456.1-201ENST00000456064 1369 ntBASIC18.42■□□□□ 0.54
CIITAP33076 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CIITAP33076 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms