Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC024909.3-201ENST00000611513 2257 ntBASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 KLF2P3-201ENST00000451977 1087 ntBASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC138761.1-201ENST00000584393 385 ntBASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TMX2-CTNND1H3BSU7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC02228-204ENST00000642115 2962 ntBASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC107890.1-201ENST00000422478 521 ntBASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 RBPMS2P1-201ENST00000437762 623 ntBASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 DUX4L27-201ENST00000554796 1261 ntBASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.19■□□□□ 0.18
TMX2-CTNND1H3BSU7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 SPCS2P4-201ENST00000436160 681 ntBASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.18■□□□□ 0.18
TMX2-CTNND1H3BSU7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms