Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA1Q9Y5H4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
PCDHGA1Q9Y5H4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
PCDHGA1Q9Y5H4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHGA1Q9Y5H4 AC096631.2-201ENST00000436136 790 ntBASIC22.99■■□□□ 1.27
PCDHGA1Q9Y5H4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.99■■□□□ 1.27
PCDHGA1Q9Y5H4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA1Q9Y5H4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA1Q9Y5H4 AC142472.1-201ENST00000612013 1741 ntBASIC22.97■■□□□ 1.27
PCDHGA1Q9Y5H4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA1Q9Y5H4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.97■■□□□ 1.27
PCDHGA1Q9Y5H4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDHGA1Q9Y5H4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA1Q9Y5H4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
PCDHGA1Q9Y5H4 MIR4466-201ENST00000606121 54 ntBASIC22.96■■□□□ 1.27
PCDHGA1Q9Y5H4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.96■■□□□ 1.27
PCDHGA1Q9Y5H4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA1Q9Y5H4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA1Q9Y5H4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.95■■□□□ 1.26
PCDHGA1Q9Y5H4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA1Q9Y5H4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.95■■□□□ 1.26
PCDHGA1Q9Y5H4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 LINC01003-201ENST00000564834 1764 ntBASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA1Q9Y5H4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA1Q9Y5H4 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDHGA1Q9Y5H4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDHGA1Q9Y5H4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA1Q9Y5H4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA1Q9Y5H4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 AL512631.2-201ENST00000604634 923 ntBASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA1Q9Y5H4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.91■■□□□ 1.26
PCDHGA1Q9Y5H4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
PCDHGA1Q9Y5H4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.9■■□□□ 1.26
PCDHGA1Q9Y5H4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
PCDHGA1Q9Y5H4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PCDHGA1Q9Y5H4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
PCDHGA1Q9Y5H4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.89■■□□□ 1.26
PCDHGA1Q9Y5H4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.89■■□□□ 1.25
PCDHGA1Q9Y5H4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.89■■□□□ 1.25
PCDHGA1Q9Y5H4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.89■■□□□ 1.25
PCDHGA1Q9Y5H4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.89■■□□□ 1.25
PCDHGA1Q9Y5H4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.89■■□□□ 1.25
PCDHGA1Q9Y5H4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
PCDHGA1Q9Y5H4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA1Q9Y5H4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
PCDHGA1Q9Y5H4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA1Q9Y5H4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms