Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
LINC00643Q86TS7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 AC096887.2-201ENST00000623443 1957 ntBASIC14.97□□□□□ -0.01
LINC00643Q86TS7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LINC00643Q86TS7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LINC00643Q86TS7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LINC00643Q86TS7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
LINC00643Q86TS7 EED-207ENST00000528180 1745 ntTSL 5 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
LINC00643Q86TS7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LINC00643Q86TS7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LINC00643Q86TS7 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 AC127496.7-201ENST00000625110 1798 ntBASIC14.92□□□□□ -0.02
LINC00643Q86TS7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC14.92□□□□□ -0.02
LINC00643Q86TS7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 AC233723.2-201ENST00000623798 2106 ntBASIC14.91□□□□□ -0.02
LINC00643Q86TS7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LINC00643Q86TS7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 AC007375.3-201ENST00000600936 2314 ntBASIC14.9□□□□□ -0.02
LINC00643Q86TS7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00643Q86TS7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms