Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13DQ5THJ4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 AC010997.5-201ENST00000609182 354 ntBASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 MIR6724-1-201ENST00000616420 92 ntBASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 MIR6724-2-201ENST00000616483 92 ntBASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 MIR6724-4-201ENST00000617390 92 ntBASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 MIR6724-3-201ENST00000622482 92 ntBASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13DQ5THJ4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC16.27■□□□□ 0.2
VPS13DQ5THJ4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS13DQ5THJ4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS13DQ5THJ4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS13DQ5THJ4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13DQ5THJ4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
VPS13DQ5THJ4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 SUDS3P1-201ENST00000505831 966 ntBASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 AC133561.4-201ENST00000566112 224 ntBASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 AC092666.2-201ENST00000613287 246 ntBASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.26■□□□□ 0.19
VPS13DQ5THJ4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13DQ5THJ4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13DQ5THJ4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13DQ5THJ4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 GAK-223ENST00000628912 497 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13DQ5THJ4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13DQ5THJ4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13DQ5THJ4 AC026271.2-201ENST00000428091 497 ntBASIC16.21■□□□□ 0.19
VPS13DQ5THJ4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS13DQ5THJ4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.21■□□□□ 0.18
VPS13DQ5THJ4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 MTDHP2-201ENST00000601468 714 ntBASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 AC135279.3-201ENST00000610945 1311 ntBASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13DQ5THJ4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13DQ5THJ4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS13DQ5THJ4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13DQ5THJ4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS13DQ5THJ4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms