Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL6A5A8TX70 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A5A8TX70 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL6A5A8TX70 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A5A8TX70 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A5A8TX70 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A5A8TX70 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A5A8TX70 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A5A8TX70 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A5A8TX70 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A5A8TX70 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A5A8TX70 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.93■□□□□ 0.62
COL6A5A8TX70 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 SLC47A1P1-202ENST00000449666 945 ntBASIC18.92■□□□□ 0.62
COL6A5A8TX70 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A5A8TX70 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A5A8TX70 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A5A8TX70 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A5A8TX70 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A5A8TX70 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A5A8TX70 IRS3P-201ENST00000223076 1006 ntBASIC18.9■□□□□ 0.62
COL6A5A8TX70 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A5A8TX70 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A5A8TX70 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A5A8TX70 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.9■□□□□ 0.62
COL6A5A8TX70 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.9■□□□□ 0.62
COL6A5A8TX70 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A5A8TX70 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL6A5A8TX70 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.89■□□□□ 0.62
COL6A5A8TX70 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.89■□□□□ 0.62
COL6A5A8TX70 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
COL6A5A8TX70 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A5A8TX70 CA15P2-201ENST00000611168 834 ntBASIC18.89■□□□□ 0.61
COL6A5A8TX70 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A5A8TX70 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A5A8TX70 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A5A8TX70 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A5A8TX70 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A5A8TX70 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A5A8TX70 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A5A8TX70 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A5A8TX70 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A5A8TX70 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A5A8TX70 ABHD17AP1-201ENST00000358206 933 ntBASIC18.87■□□□□ 0.61
COL6A5A8TX70 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 AC066615.1-201ENST00000640911 628 ntBASIC18.87■□□□□ 0.61
COL6A5A8TX70 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A5A8TX70 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A5A8TX70 AC011551.1-201ENST00000614101 683 ntBASIC18.87■□□□□ 0.61
COL6A5A8TX70 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A5A8TX70 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL6A5A8TX70 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A5A8TX70 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A5A8TX70 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A5A8TX70 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A5A8TX70 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A5A8TX70 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
COL6A5A8TX70 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A5A8TX70 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A5A8TX70 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A5A8TX70 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A5A8TX70 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A5A8TX70 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL6A5A8TX70 SRD5A1P1-201ENST00000442297 786 ntBASIC18.83■□□□□ 0.61
COL6A5A8TX70 AL137784.2-201ENST00000607332 1000 ntBASIC18.83■□□□□ 0.61
COL6A5A8TX70 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.83■□□□□ 0.6
COL6A5A8TX70 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A5A8TX70 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A5A8TX70 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A5A8TX70 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL6A5A8TX70 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A5A8TX70 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A5A8TX70 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A5A8TX70 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms