Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 PRAL-201ENST00000624952 3286 ntBASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
UBE2D4Q9Y2X8 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AL031133.1-201ENST00000406807 723 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC211429.1-201ENST00000415277 523 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AP002383.4-201ENST00000442518 975 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 BX005266.1-201ENST00000473402 457 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC104819.1-201ENST00000504587 486 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC064862.7-201ENST00000604520 867 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AL139424.1-201ENST00000607572 797 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 REXO1L3P-201ENST00000622202 1288 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AL136379.1-201ENST00000623471 2642 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 AC013268.4-201ENST00000637413 2228 ntBASIC11.5□□□□□ -0.57
UBE2D4Q9Y2X8 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 AC087163.2-201ENST00000457299 853 ntBASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
UBE2D4Q9Y2X8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms