Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 AC061975.2-201ENST00000581722 295 ntBASIC17.34■□□□□ 0.37
CDH9Q9ULB4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH9Q9ULB4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 PRORSD1P-202ENST00000563365 2154 ntBASIC17.33■□□□□ 0.37
CDH9Q9ULB4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH9Q9ULB4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AL035456.1-201ENST00000456064 1369 ntBASIC17.33■□□□□ 0.36
CDH9Q9ULB4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AL158211.3-201ENST00000607385 239 ntBASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AL365330.1-201ENST00000607459 531 ntBASIC17.33■□□□□ 0.36
CDH9Q9ULB4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 ME2P1-201ENST00000426028 1970 ntBASIC17.33■□□□□ 0.36
CDH9Q9ULB4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDH9Q9ULB4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 NKILA-202ENST00000614771 2598 ntBASIC17.32■□□□□ 0.36
CDH9Q9ULB4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 AC055876.3-201ENST00000431496 288 ntBASIC17.32■□□□□ 0.36
CDH9Q9ULB4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 AC005498.2-205ENST00000593218 784 ntBASIC17.32■□□□□ 0.36
CDH9Q9ULB4 AC138649.4-201ENST00000612222 287 ntBASIC17.32■□□□□ 0.36
CDH9Q9ULB4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.32■□□□□ 0.36
CDH9Q9ULB4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH9Q9ULB4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ALOX12P2-203ENST00000570921 1945 ntBASIC17.31■□□□□ 0.36
CDH9Q9ULB4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 FO538757.1-201ENST00000623083 1397 ntBASIC17.31■□□□□ 0.36
CDH9Q9ULB4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms