Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 AL139011.1-202ENST00000642063 584 ntBASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AL391256.1-201ENST00000443260 1855 ntBASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC074338.1-201ENST00000416825 156 ntBASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 FAM86HP-204ENST00000513466 959 ntBASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 GGT4P-201ENST00000623672 1708 ntBASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF541Q9H0D2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 KRT90P-201ENST00000549264 1064 ntBASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 CLUHP6-201ENST00000580789 941 ntBASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF541Q9H0D2 INTS4P2-202ENST00000614726 2019 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 249.8 ms