Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 SLED1-202ENST00000512051 380 ntBASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 BTNL10-201ENST00000595971 695 ntBASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 AC133539.2-201ENST00000604757 467 ntBASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 AC244093.1-201ENST00000610837 814 ntBASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 AC020907.1-201ENST00000616460 1350 ntBASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 FAM21FP-201ENST00000426241 1131 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 ACTG1P3-201ENST00000431775 1114 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 FO681548.1-201ENST00000455617 1132 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 TIMM17BP1-201ENST00000545713 516 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 DUX4L45-201ENST00000566406 1057 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 MIR6727-201ENST00000620702 65 ntBASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK3Q9BYB0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AC004987.2-201ENST00000395959 1148 ntBASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 RNA5SP423-201ENST00000517127 109 ntBASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 PTP4A1P2-201ENST00000546033 454 ntBASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 BNIP3P1-202ENST00000550043 1585 ntBASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 C2orf69P2-201ENST00000562032 1123 ntBASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
SHANK3Q9BYB0 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 AP001889.1-201ENST00000525414 633 ntBASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms