Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC020765.3-201ENST00000613051 740 ntBASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 GPAA1P2-202ENST00000606848 1787 ntBASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SPCS2P4-201ENST00000436160 681 ntBASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 UXT-AS1-201ENST00000590504 1525 ntBASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTCHD1Q96NR3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms