Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 LINC02199-201ENST00000506655 2702 ntBASIC16.07■□□□□ 0.16
VRK3Q8IV63 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 RN7SL589P-201ENST00000481268 310 ntBASIC16.07■□□□□ 0.16
VRK3Q8IV63 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.07■□□□□ 0.16
VRK3Q8IV63 AC006449.6-201ENST00000612330 2296 ntBASIC16.07■□□□□ 0.16
VRK3Q8IV63 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
VRK3Q8IV63 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC069335.1-201ENST00000489972 472 ntBASIC16.06■□□□□ 0.16
VRK3Q8IV63 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC073389.1-201ENST00000595595 795 ntBASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AC008267.7-201ENST00000624570 1194 ntBASIC16.06■□□□□ 0.16
VRK3Q8IV63 AL513210.1-201ENST00000629608 234 ntBASIC16.06■□□□□ 0.16
VRK3Q8IV63 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.06■□□□□ 0.16
VRK3Q8IV63 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 AL596087.1-201ENST00000400979 1969 ntBASIC16.06■□□□□ 0.16
VRK3Q8IV63 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VRK3Q8IV63 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 MTHFR-217ENST00000641820 1569 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AL592424.1-201ENST00000563624 1536 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC018695.7-201ENST00000624587 2492 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC004461.1-201ENST00000412461 403 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms