Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC036111.1-201ENST00000533973 1582 ntBASIC10.23□□□□□ -0.77
LINC00643Q86TS7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 GRAMD4P2-201ENST00000423297 1097 ntBASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC004987.1-201ENST00000428627 508 ntBASIC10.23□□□□□ -0.77
LINC00643Q86TS7 KRT16P3-201ENST00000439127 1283 ntBASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 MPST-208ENST00000628507 698 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CYP51A1P1-201ENST00000492267 1507 ntBASIC10.23□□□□□ -0.77
LINC00643Q86TS7 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 NT5C3AP1-201ENST00000394500 1012 ntBASIC10.22□□□□□ -0.77
LINC00643Q86TS7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 RARRES2P4-201ENST00000514074 484 ntBASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms