Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.63■□□□□ 0.09
LIM2P55344 AL671277.1-201ENST00000429656 993 ntBASIC15.63■□□□□ 0.09
LIM2P55344 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.63■□□□□ 0.09
LIM2P55344 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 ACTG1P14-201ENST00000446382 1122 ntBASIC15.63■□□□□ 0.09
LIM2P55344 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.63■□□□□ 0.09
LIM2P55344 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.63■□□□□ 0.09
LIM2P55344 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 AC005829.1-201ENST00000570002 483 ntBASIC15.63■□□□□ 0.09
LIM2P55344 MIR3687-2-201ENST00000577708 61 ntBASIC15.63■□□□□ 0.09
LIM2P55344 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
LIM2P55344 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LIM2P55344 MIR3687-1-201ENST00000614492 61 ntBASIC15.63■□□□□ 0.09
LIM2P55344 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LIM2P55344 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.63■□□□□ 0.09
LIM2P55344 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LIM2P55344 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
LIM2P55344 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIM2P55344 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.63■□□□□ 0.09
LIM2P55344 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.63■□□□□ 0.09
LIM2P55344 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 AC007950.2-201ENST00000615045 2347 ntBASIC15.62■□□□□ 0.09
LIM2P55344 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.62■□□□□ 0.09
LIM2P55344 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.62■□□□□ 0.09
LIM2P55344 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 RPSAP43-201ENST00000402237 625 ntBASIC15.62■□□□□ 0.09
LIM2P55344 UPF3AP3-201ENST00000420996 769 ntBASIC15.62■□□□□ 0.09
LIM2P55344 AC112482.1-201ENST00000492080 688 ntBASIC15.62■□□□□ 0.09
LIM2P55344 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.62■□□□□ 0.09
LIM2P55344 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.62■□□□□ 0.09
LIM2P55344 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.62■□□□□ 0.09
LIM2P55344 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LIM2P55344 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
LIM2P55344 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.62■□□□□ 0.09
LIM2P55344 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.62■□□□□ 0.09
LIM2P55344 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LIM2P55344 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIM2P55344 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.61■□□□□ 0.09
LIM2P55344 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LIM2P55344 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.61■□□□□ 0.09
LIM2P55344 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.61■□□□□ 0.09
LIM2P55344 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 ELL2P1-201ENST00000413990 1906 ntBASIC15.61■□□□□ 0.09
LIM2P55344 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.61■□□□□ 0.09
LIM2P55344 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.61■□□□□ 0.09
LIM2P55344 TFAMP1-201ENST00000412727 736 ntBASIC15.61■□□□□ 0.09
LIM2P55344 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.61■□□□□ 0.09
LIM2P55344 ADH5P3-201ENST00000433842 1137 ntBASIC15.61■□□□□ 0.09
LIM2P55344 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LIM2P55344 FAM86C2P-203ENST00000528684 1004 ntBASIC15.61■□□□□ 0.09
LIM2P55344 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.61■□□□□ 0.09
LIM2P55344 AL135744.1-201ENST00000565098 629 ntBASIC15.61■□□□□ 0.09
LIM2P55344 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.61■□□□□ 0.09
LIM2P55344 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIM2P55344 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms