Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR6080-201ENST00000617359 66 ntBASIC18.47■□□□□ 0.55
CIITAP33076 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CIITAP33076 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CIITAP33076 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CIITAP33076 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CIITAP33076 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.46■□□□□ 0.55
CIITAP33076 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.46■□□□□ 0.55
CIITAP33076 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.46■□□□□ 0.55
CIITAP33076 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.46■□□□□ 0.55
CIITAP33076 BANF1P1-201ENST00000553684 263 ntBASIC18.46■□□□□ 0.55
CIITAP33076 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.46■□□□□ 0.55
CIITAP33076 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CIITAP33076 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.46■□□□□ 0.55
CIITAP33076 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CIITAP33076 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CIITAP33076 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.46■□□□□ 0.55
CIITAP33076 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
CIITAP33076 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CIITAP33076 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
CIITAP33076 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.45■□□□□ 0.54
CIITAP33076 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.45■□□□□ 0.54
CIITAP33076 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.45■□□□□ 0.54
CIITAP33076 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CIITAP33076 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CIITAP33076 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 CYMP-203ENST00000474680 1263 ntBASIC18.45■□□□□ 0.54
CIITAP33076 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.45■□□□□ 0.54
CIITAP33076 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.45■□□□□ 0.54
CIITAP33076 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.45■□□□□ 0.54
CIITAP33076 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.45■□□□□ 0.54
CIITAP33076 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.45■□□□□ 0.54
CIITAP33076 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.45■□□□□ 0.54
CIITAP33076 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CIITAP33076 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.45■□□□□ 0.54
CIITAP33076 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
CIITAP33076 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CIITAP33076 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.44■□□□□ 0.54
CIITAP33076 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CIITAP33076 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.44■□□□□ 0.54
CIITAP33076 FAM86GP-201ENST00000448322 971 ntBASIC18.44■□□□□ 0.54
CIITAP33076 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.44■□□□□ 0.54
CIITAP33076 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.44■□□□□ 0.54
CIITAP33076 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.44■□□□□ 0.54
CIITAP33076 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.44■□□□□ 0.54
CIITAP33076 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms