Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.79■□□□□ 0.6
SMARCA1P28370 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 AC105021.1-202ENST00000570572 669 ntBASIC18.79■□□□□ 0.6
SMARCA1P28370 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 AC026979.3-201ENST00000607315 403 ntBASIC18.79■□□□□ 0.6
SMARCA1P28370 AC003101.2-201ENST00000612557 442 ntBASIC18.79■□□□□ 0.6
SMARCA1P28370 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SMARCA1P28370 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SMARCA1P28370 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCA1P28370 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SMARCA1P28370 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCA1P28370 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMARCA1P28370 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.78■□□□□ 0.6
SMARCA1P28370 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.78■□□□□ 0.6
SMARCA1P28370 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.78■□□□□ 0.6
SMARCA1P28370 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.78■□□□□ 0.6
SMARCA1P28370 AL133215.2-201ENST00000609242 977 ntBASIC18.78■□□□□ 0.6
SMARCA1P28370 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMARCA1P28370 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.78■□□□□ 0.6
SMARCA1P28370 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCA1P28370 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.78■□□□□ 0.6
SMARCA1P28370 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCA1P28370 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.78■□□□□ 0.6
SMARCA1P28370 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SMARCA1P28370 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
SMARCA1P28370 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.77■□□□□ 0.6
SMARCA1P28370 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMARCA1P28370 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMARCA1P28370 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCA1P28370 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMARCA1P28370 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCA1P28370 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.77■□□□□ 0.6
SMARCA1P28370 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.77■□□□□ 0.6
SMARCA1P28370 AL139010.1-201ENST00000454878 894 ntBASIC18.77■□□□□ 0.6
SMARCA1P28370 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.77■□□□□ 0.6
SMARCA1P28370 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.77■□□□□ 0.6
SMARCA1P28370 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.77■□□□□ 0.6
SMARCA1P28370 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCA1P28370 RN7SL828P-201ENST00000607615 303 ntBASIC18.77■□□□□ 0.6
SMARCA1P28370 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.77■□□□□ 0.6
SMARCA1P28370 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SMARCA1P28370 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SMARCA1P28370 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCA1P28370 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SMARCA1P28370 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.77■□□□□ 0.59
SMARCA1P28370 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
SMARCA1P28370 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.77■□□□□ 0.59
SMARCA1P28370 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SMARCA1P28370 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMARCA1P28370 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMARCA1P28370 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SMARCA1P28370 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms