Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 FOXO1B-201ENST00000504678 1527 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL9A1P20849 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
COL9A1P20849 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 SSR1P1-201ENST00000407630 814 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 MIR1227-201ENST00000408484 88 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.79■□□□□ 0.28
COL9A1P20849 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.79■□□□□ 0.28
COL9A1P20849 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.79■□□□□ 0.28
COL9A1P20849 RPL13AP19-201ENST00000434320 584 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 MAGEA5-201ENST00000446757 942 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.79■□□□□ 0.28
COL9A1P20849 AC105233.2-201ENST00000523697 349 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 AF228730.5-201ENST00000530288 346 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.79■□□□□ 0.28
COL9A1P20849 CHMP4BP1-201ENST00000556017 588 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 AP001527.2-201ENST00000614441 631 ntBASIC16.79■□□□□ 0.28
COL9A1P20849 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.79■□□□□ 0.28
COL9A1P20849 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL9A1P20849 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 AC092053.1-201ENST00000605787 1936 ntBASIC16.78■□□□□ 0.28
COL9A1P20849 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL9A1P20849 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC16.78■□□□□ 0.28
COL9A1P20849 IMP3P2-201ENST00000489760 475 ntBASIC16.78■□□□□ 0.28
COL9A1P20849 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.78■□□□□ 0.28
COL9A1P20849 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC16.78■□□□□ 0.28
COL9A1P20849 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.78■□□□□ 0.28
COL9A1P20849 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 AC073389.1-201ENST00000595595 795 ntBASIC16.78■□□□□ 0.28
COL9A1P20849 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.78■□□□□ 0.28
COL9A1P20849 AL034417.3-201ENST00000641100 1043 ntBASIC16.78■□□□□ 0.28
COL9A1P20849 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL9A1P20849 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 LINC02012-201ENST00000608206 1725 ntBASIC16.78■□□□□ 0.28
COL9A1P20849 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.78■□□□□ 0.28
COL9A1P20849 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL9A1P20849 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL9A1P20849 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL9A1P20849 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.77■□□□□ 0.28
COL9A1P20849 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.77■□□□□ 0.28
COL9A1P20849 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms