Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGB1P09429 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGB1P09429 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 MIR574-201ENST00000385209 96 ntBASIC19.4■□□□□ 0.7
HMGB1P09429 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB1P09429 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.4■□□□□ 0.7
HMGB1P09429 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 AC099522.2-201ENST00000607001 744 ntBASIC19.4■□□□□ 0.7
HMGB1P09429 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HMGB1P09429 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HMGB1P09429 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB1P09429 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.39■□□□□ 0.7
HMGB1P09429 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.39■□□□□ 0.7
HMGB1P09429 PCDHA1-201ENST00000378133 2726 ntBASIC19.39■□□□□ 0.7
HMGB1P09429 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HMGB1P09429 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
HMGB1P09429 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
HMGB1P09429 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
HMGB1P09429 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 MIR648-201ENST00000385046 94 ntBASIC19.39■□□□□ 0.69
HMGB1P09429 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 RARRES2P8-201ENST00000566335 367 ntBASIC19.39■□□□□ 0.69
HMGB1P09429 AC002347.1-201ENST00000569543 541 ntBASIC19.39■□□□□ 0.69
HMGB1P09429 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.39■□□□□ 0.69
HMGB1P09429 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.39■□□□□ 0.69
HMGB1P09429 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 AKAP8P1-201ENST00000434743 1349 ntBASIC19.39■□□□□ 0.69
HMGB1P09429 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB1P09429 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGB1P09429 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB1P09429 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
HMGB1P09429 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HMGB1P09429 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
HMGB1P09429 MCCD1P2-201ENST00000423228 335 ntBASIC19.38■□□□□ 0.69
HMGB1P09429 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 PRYP6-201ENST00000514804 343 ntBASIC19.38■□□□□ 0.69
HMGB1P09429 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms