Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXD4P09016 AC116353.5-201ENST00000638148 1699 ntBASIC14.99□□□□□ -0.01
HOXD4P09016 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXD4P09016 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXD4P09016 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXD4P09016 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXD4P09016 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.98□□□□□ -0.01
HOXD4P09016 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.98□□□□□ -0.01
HOXD4P09016 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.98□□□□□ -0.01
HOXD4P09016 SPDYE7P-202ENST00000420373 878 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 AC244107.1-201ENST00000442033 332 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.98□□□□□ -0.01
HOXD4P09016 MIR4745-201ENST00000577608 62 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 AC138761.1-201ENST00000584393 385 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 AC008267.7-201ENST00000624570 1194 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HOXD4P09016 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HOXD4P09016 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 AC099063.4-201ENST00000641099 1602 ntBASIC14.98□□□□□ -0.01
HOXD4P09016 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
HOXD4P09016 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXD4P09016 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXD4P09016 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXD4P09016 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.97□□□□□ -0.01
HOXD4P09016 LINC01225-203ENST00000563550 1244 ntBASIC14.97□□□□□ -0.01
HOXD4P09016 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXD4P09016 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXD4P09016 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
HOXD4P09016 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXD4P09016 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXD4P09016 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXD4P09016 TUBB8P12-201ENST00000308911 1335 ntBASIC14.96□□□□□ -0.01
HOXD4P09016 TUBB7P-202ENST00000428444 1305 ntBASIC14.96□□□□□ -0.01
HOXD4P09016 TUBB8P7-204ENST00000567960 1332 ntBASIC14.96□□□□□ -0.01
HOXD4P09016 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HOXD4P09016 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
HOXD4P09016 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXD4P09016 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.96□□□□□ -0.01
HOXD4P09016 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXD4P09016 SPCS2P4-201ENST00000436160 681 ntBASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms