Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 AC125634.1-201ENST00000438758 1403 ntBASIC16.62■□□□□ 0.25
VIMP08670 AC138035.3-201ENST00000622706 2791 ntBASIC16.62■□□□□ 0.25
VIMP08670 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.62■□□□□ 0.25
VIMP08670 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.62■□□□□ 0.25
VIMP08670 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 AC010947.1-201ENST00000623454 693 ntBASIC16.62■□□□□ 0.25
VIMP08670 AL023973.1-201ENST00000624619 620 ntBASIC16.62■□□□□ 0.25
VIMP08670 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VIMP08670 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.62■□□□□ 0.25
VIMP08670 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 SSR4P1-203ENST00000599569 2260 ntBASIC16.62■□□□□ 0.25
VIMP08670 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.62■□□□□ 0.25
VIMP08670 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VIMP08670 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 C8orf49-201ENST00000525043 1968 ntBASIC16.61■□□□□ 0.25
VIMP08670 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 SNORA78-201ENST00000459373 127 ntBASIC16.61■□□□□ 0.25
VIMP08670 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 AC005332.3-201ENST00000589904 676 ntBASIC16.61■□□□□ 0.25
VIMP08670 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.61■□□□□ 0.25
VIMP08670 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 AC140113.3-201ENST00000605663 199 ntBASIC16.61■□□□□ 0.25
VIMP08670 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 AC132938.5-201ENST00000624980 1813 ntBASIC16.61■□□□□ 0.25
VIMP08670 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.61■□□□□ 0.25
VIMP08670 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VIMP08670 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VIMP08670 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 AC006486.2-201ENST00000624246 2199 ntBASIC16.6■□□□□ 0.25
VIMP08670 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VIMP08670 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms