Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RN7SL589P-201ENST00000481268 310 ntBASIC17.28■□□□□ 0.36
APOEP02649 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
APOEP02649 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.28■□□□□ 0.36
APOEP02649 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.28■□□□□ 0.36
APOEP02649 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
APOEP02649 AC055717.3-201ENST00000622967 595 ntBASIC17.28■□□□□ 0.36
APOEP02649 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
APOEP02649 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 AC134684.3-201ENST00000641758 218 ntBASIC17.28■□□□□ 0.36
APOEP02649 AC079781.4-201ENST00000641908 219 ntBASIC17.28■□□□□ 0.36
APOEP02649 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 AC006449.5-201ENST00000610658 2098 ntBASIC17.28■□□□□ 0.36
APOEP02649 WASH6P-202ENST00000359512 1437 ntBASIC17.28■□□□□ 0.36
APOEP02649 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.28■□□□□ 0.36
APOEP02649 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
APOEP02649 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
APOEP02649 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.27■□□□□ 0.36
APOEP02649 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.27■□□□□ 0.36
APOEP02649 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.27■□□□□ 0.36
APOEP02649 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.27■□□□□ 0.36
APOEP02649 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.27■□□□□ 0.36
APOEP02649 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
APOEP02649 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.27■□□□□ 0.36
APOEP02649 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.27■□□□□ 0.35
APOEP02649 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
APOEP02649 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.27■□□□□ 0.35
APOEP02649 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.27■□□□□ 0.35
APOEP02649 AC006538.1-201ENST00000567905 1585 ntBASIC17.27■□□□□ 0.35
APOEP02649 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.27■□□□□ 0.35
APOEP02649 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.27■□□□□ 0.35
APOEP02649 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.27■□□□□ 0.35
APOEP02649 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.27■□□□□ 0.35
APOEP02649 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
APOEP02649 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
APOEP02649 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
APOEP02649 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
APOEP02649 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.26■□□□□ 0.35
APOEP02649 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
APOEP02649 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.26■□□□□ 0.35
APOEP02649 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 AKAP8P1-201ENST00000434743 1349 ntBASIC17.26■□□□□ 0.35
APOEP02649 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
APOEP02649 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
APOEP02649 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.26■□□□□ 0.35
APOEP02649 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms