Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.84□□□□□ -0.03
SPTA1P02549 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.84□□□□□ -0.03
SPTA1P02549 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.84□□□□□ -0.03
SPTA1P02549 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.84□□□□□ -0.03
SPTA1P02549 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 MIR4706-201ENST00000582134 82 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 AC244093.1-201ENST00000610837 814 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
SPTA1P02549 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.84□□□□□ -0.03
SPTA1P02549 CROCCP4-201ENST00000457096 498 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 AC023310.3-201ENST00000557027 670 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.84□□□□□ -0.03
SPTA1P02549 AC100756.1-201ENST00000562736 682 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 AC098818.2-201ENST00000564925 2320 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 AC138749.3-201ENST00000567691 622 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 AC116165.1-201ENST00000611806 668 ntBASIC14.84□□□□□ -0.03
SPTA1P02549 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.84□□□□□ -0.03
SPTA1P02549 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.84□□□□□ -0.03
SPTA1P02549 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.84□□□□□ -0.03
SPTA1P02549 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.84□□□□□ -0.03
SPTA1P02549 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SPTA1P02549 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
SPTA1P02549 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.83□□□□□ -0.03
SPTA1P02549 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.83□□□□□ -0.03
SPTA1P02549 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.83□□□□□ -0.03
SPTA1P02549 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.83□□□□□ -0.03
SPTA1P02549 AC009113.1-201ENST00000570267 2443 ntBASIC14.83□□□□□ -0.03
SPTA1P02549 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.03
SPTA1P02549 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SPTA1P02549 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 BCRP2-202ENST00000447763 634 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.83□□□□□ -0.04
SPTA1P02549 AL589987.1-201ENST00000453380 819 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 BCRP6-201ENST00000510112 632 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 BCRP7-201ENST00000511549 544 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 MIR4722-201ENST00000578292 60 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SPTA1P02549 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SPTA1P02549 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.83□□□□□ -0.04
SPTA1P02549 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.83□□□□□ -0.04
SPTA1P02549 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.04
SPTA1P02549 SPDYE17-201ENST00000412399 783 ntBASIC14.83□□□□□ -0.04
SPTA1P02549 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.83□□□□□ -0.04
SPTA1P02549 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SPTA1P02549 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SPTA1P02549 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SPTA1P02549 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SPTA1P02549 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms