Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 EGLN1P1-201ENST00000531623 762 ntBASIC12.44□□□□□ -0.42
HLA-DQA1P01909 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 AC109462.3-201ENST00000573934 613 ntBASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 AC020658.6-201ENST00000623564 1870 ntBASIC12.44□□□□□ -0.42
HLA-DQA1P01909 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DQA1P01909 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AL021920.2-201ENST00000624828 1351 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 LINC01568-207ENST00000641790 1380 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 LINC00528-201ENST00000600723 2160 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AC136621.1-201ENST00000624017 2304 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 CYP2D8P-201ENST00000433633 1490 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 TSPY12P-201ENST00000421279 868 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AL353719.1-201ENST00000566847 864 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 MIR3917-201ENST00000580971 93 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AC092865.7-201ENST00000641832 219 ntBASIC12.43□□□□□ -0.42
HLA-DQA1P01909 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DQA1P01909 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms