Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
PRKNO60260 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PRKNO60260 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.33■□□□□ 0.04
PRKNO60260 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PRKNO60260 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PRKNO60260 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PRKNO60260 UXT-AS1-201ENST00000590504 1525 ntBASIC15.33■□□□□ 0.04
PRKNO60260 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.33■□□□□ 0.04
PRKNO60260 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKNO60260 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.32■□□□□ 0.04
PRKNO60260 GPS2P2-201ENST00000430745 888 ntBASIC15.32■□□□□ 0.04
PRKNO60260 IGHV3-62-201ENST00000520057 340 ntBASIC15.32■□□□□ 0.04
PRKNO60260 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.32■□□□□ 0.04
PRKNO60260 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.32■□□□□ 0.04
PRKNO60260 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.32■□□□□ 0.04
PRKNO60260 AC008267.7-201ENST00000624570 1194 ntBASIC15.32■□□□□ 0.04
PRKNO60260 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKNO60260 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKNO60260 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKNO60260 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.32■□□□□ 0.04
PRKNO60260 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
PRKNO60260 PCDHB19P-201ENST00000570871 2371 ntBASIC15.32■□□□□ 0.04
PRKNO60260 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.32■□□□□ 0.04
PRKNO60260 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 GGT3P-204ENST00000453783 1664 ntBASIC15.32■□□□□ 0.04
PRKNO60260 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PRKNO60260 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.31■□□□□ 0.04
PRKNO60260 KRT18P32-201ENST00000424695 1287 ntBASIC15.31■□□□□ 0.04
PRKNO60260 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 HLA-J-202ENST00000469281 1241 ntBASIC15.31■□□□□ 0.04
PRKNO60260 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.31■□□□□ 0.04
PRKNO60260 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 SLC25A39P2-201ENST00000537614 270 ntBASIC15.31■□□□□ 0.04
PRKNO60260 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 AP000842.3-202ENST00000569238 1080 ntBASIC15.31■□□□□ 0.04
PRKNO60260 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.31■□□□□ 0.04
PRKNO60260 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 AC093028.1-201ENST00000622998 982 ntBASIC15.31■□□□□ 0.04
PRKNO60260 AC009093.7-201ENST00000623853 1223 ntBASIC15.31■□□□□ 0.04
PRKNO60260 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PRKNO60260 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms