Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.51■□□□□ 0.55
CHMP2AO43633 HLA-J-203ENST00000494367 1087 ntBASIC18.51■□□□□ 0.55
CHMP2AO43633 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.51■□□□□ 0.55
CHMP2AO43633 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.51■□□□□ 0.55
CHMP2AO43633 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.51■□□□□ 0.55
CHMP2AO43633 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.51■□□□□ 0.55
CHMP2AO43633 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CHMP2AO43633 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.51■□□□□ 0.55
CHMP2AO43633 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.51■□□□□ 0.55
CHMP2AO43633 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CHMP2AO43633 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP2AO43633 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP2AO43633 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CHMP2AO43633 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CHMP2AO43633 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP2AO43633 AC027796.2-201ENST00000575326 344 ntBASIC18.5■□□□□ 0.55
CHMP2AO43633 AC073389.1-201ENST00000595595 795 ntBASIC18.5■□□□□ 0.55
CHMP2AO43633 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP2AO43633 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP2AO43633 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP2AO43633 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
CHMP2AO43633 PRORSD1P-202ENST00000563365 2154 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.49■□□□□ 0.55
CHMP2AO43633 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 SPDYE14P-201ENST00000442619 822 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 AC026150.2-201ENST00000564693 1156 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 Z92544.3-201ENST00000624747 417 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.49■□□□□ 0.55
CHMP2AO43633 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 AC084121.4-201ENST00000641598 221 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 AF228730.8-201ENST00000642140 221 ntBASIC18.49■□□□□ 0.55
CHMP2AO43633 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP2AO43633 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP2AO43633 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP2AO43633 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.49■□□□□ 0.55
CHMP2AO43633 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP2AO43633 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms