Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.08□□□□□ -0.16
SDCBPO00560 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.08□□□□□ -0.16
SDCBPO00560 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 SCARNA2-201ENST00000458748 420 ntBASIC14.08□□□□□ -0.16
SDCBPO00560 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.08□□□□□ -0.16
SDCBPO00560 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.08□□□□□ -0.16
SDCBPO00560 AC064862.7-201ENST00000604520 867 ntBASIC14.08□□□□□ -0.16
SDCBPO00560 AL355877.3-201ENST00000622820 899 ntBASIC14.08□□□□□ -0.16
SDCBPO00560 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SDCBPO00560 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
SDCBPO00560 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 PRAL-201ENST00000624952 3286 ntBASIC14.08□□□□□ -0.16
SDCBPO00560 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.08□□□□□ -0.16
SDCBPO00560 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDCBPO00560 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.07□□□□□ -0.16
SDCBPO00560 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 AC092850.2-201ENST00000623821 2697 ntBASIC14.07□□□□□ -0.16
SDCBPO00560 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 AP002414.1-201ENST00000391405 1147 ntBASIC14.07□□□□□ -0.16
SDCBPO00560 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.07□□□□□ -0.16
SDCBPO00560 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.07□□□□□ -0.16
SDCBPO00560 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.07□□□□□ -0.16
SDCBPO00560 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 AL353135.1-201ENST00000606729 504 ntBASIC14.07□□□□□ -0.16
SDCBPO00560 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 GGT3P-204ENST00000453783 1664 ntBASIC14.07□□□□□ -0.16
SDCBPO00560 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SDCBPO00560 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDCBPO00560 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.07□□□□□ -0.16
SDCBPO00560 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.06□□□□□ -0.16
SDCBPO00560 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.06□□□□□ -0.16
SDCBPO00560 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.06□□□□□ -0.16
SDCBPO00560 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SDCBPO00560 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDCBPO00560 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SDCBPO00560 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.06□□□□□ -0.16
SDCBPO00560 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms