Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 MIR4453-201ENST00000584019 89 ntBASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 AC008761.3-201ENST00000624803 892 ntBASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SSX2IPQ9Y2D8 TUBB8P12-201ENST00000308911 1335 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TUBB7P-202ENST00000428444 1305 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TUBB8P7-204ENST00000567960 1332 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AC124947.2-201ENST00000547118 1133 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 RARRES2P9-201ENST00000565168 469 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 LINC02560-201ENST00000596379 459 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AF228730.6-201ENST00000641497 218 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AC084121.3-201ENST00000641716 218 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AC105233.6-201ENST00000642093 218 ntBASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SSX2IPQ9Y2D8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AC015922.1-201ENST00000421102 1152 ntBASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AC142381.1-201ENST00000426099 345 ntBASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AL138918.1-201ENST00000568306 659 ntBASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
SSX2IPQ9Y2D8 AC073592.8-201ENST00000624126 511 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms