Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 AC099522.2-201ENST00000607001 744 ntBASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 AC091812.2-201ENST00000619081 385 ntBASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 REXO1L8P-201ENST00000604378 1897 ntBASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 WASH6P-202ENST00000359512 1437 ntBASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
AP4E1Q9UPM8 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 AC005622.1-201ENST00000636801 1703 ntBASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 AC006449.6-201ENST00000612330 2296 ntBASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP4E1Q9UPM8 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 FAM58CP-201ENST00000435741 640 ntBASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 PMS2P7-201ENST00000506558 1336 ntBASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
AP4E1Q9UPM8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms