Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 AC004890.2-204ENST00000481968 304 ntBASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TM9SF3Q9HD45 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AP3S2-216ENST00000617003 1561 ntBASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AC073389.1-201ENST00000595595 795 ntBASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 AC003101.2-201ENST00000612557 442 ntBASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TM9SF3Q9HD45 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 AC105020.1-201ENST00000435356 2205 ntBASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 AC100757.3-201ENST00000622361 1406 ntBASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 SERBP1P5-201ENST00000510079 1181 ntBASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms