Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDH9Q9HC56 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 REXO1L8P-201ENST00000604378 1897 ntBASIC17.05■□□□□ 0.32
PCDH9Q9HC56 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 HCG4B-203ENST00000450128 991 ntBASIC17.05■□□□□ 0.32
PCDH9Q9HC56 CXCL1P1-201ENST00000502804 216 ntBASIC17.05■□□□□ 0.32
PCDH9Q9HC56 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PCDH9Q9HC56 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 AL022342.1-201ENST00000400363 863 ntBASIC17.04■□□□□ 0.32
PCDH9Q9HC56 IGLL3P-201ENST00000412472 434 ntBASIC17.04■□□□□ 0.32
PCDH9Q9HC56 FAM185BP-201ENST00000443595 716 ntBASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 AC020765.3-201ENST00000613051 740 ntBASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDH9Q9HC56 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
PCDH9Q9HC56 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms