Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 MPDU1-223ENST00000582151 728 ntBASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AC012569.1-201ENST00000591191 1524 ntBASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 AC092902.6-201ENST00000641783 218 ntBASIC15.3■□□□□ 0.04
UBQLN3Q9H347 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UBQLN3Q9H347 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AC112191.1-201ENST00000523689 701 ntBASIC15.29■□□□□ 0.04
UBQLN3Q9H347 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBQLN3Q9H347 AC022188.1-201ENST00000620960 1664 ntBASIC15.28■□□□□ 0.04
UBQLN3Q9H347 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 AP001160.2-201ENST00000596071 487 ntBASIC15.28■□□□□ 0.04
UBQLN3Q9H347 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBQLN3Q9H347 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms