Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 RN7SL560P-201ENST00000577943 264 ntBASIC17.74■□□□□ 0.43
LRCH3Q96II8 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.74■□□□□ 0.43
LRCH3Q96II8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 AC138028.4-201ENST00000564984 1845 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 YBX1P6-201ENST00000442962 1002 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 SERBP1P3-201ENST00000459980 809 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 RNA5SP410-201ENST00000516285 106 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 AL022328.3-201ENST00000607943 679 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 AL033527.5-202ENST00000641632 1098 ntBASIC17.73■□□□□ 0.43
LRCH3Q96II8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
LRCH3Q96II8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRCH3Q96II8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 UPF3AP2-201ENST00000457924 1132 ntBASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 RRP7BP-205ENST00000566851 833 ntBASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 FLJ13224-201ENST00000313737 1514 ntBASIC17.72■□□□□ 0.43
LRCH3Q96II8 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 AC092978.1-202ENST00000637590 1327 ntBASIC17.72■□□□□ 0.43
LRCH3Q96II8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
LRCH3Q96II8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LRCH3Q96II8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 EGFEM1P-202ENST00000431685 1563 ntBASIC17.71■□□□□ 0.43
LRCH3Q96II8 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LRCH3Q96II8 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LRCH3Q96II8 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.71■□□□□ 0.43
LRCH3Q96II8 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LRCH3Q96II8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms