Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 OR7E47P-204ENST00000575924 449 ntBASIC15.86■□□□□ 0.13
VMP1Q96GC9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VMP1Q96GC9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VMP1Q96GC9 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.85■□□□□ 0.13
VMP1Q96GC9 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PGAM5P1-201ENST00000518923 814 ntBASIC15.85■□□□□ 0.13
VMP1Q96GC9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AC099063.4-201ENST00000641099 1602 ntBASIC15.85■□□□□ 0.13
VMP1Q96GC9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AC129492.6-201ENST00000611383 1305 ntBASIC15.85■□□□□ 0.13
VMP1Q96GC9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VMP1Q96GC9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.85■□□□□ 0.13
VMP1Q96GC9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 IGLL3P-201ENST00000412472 434 ntBASIC15.84■□□□□ 0.13
VMP1Q96GC9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms