Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATL3Q6DD88 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATL3Q6DD88 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATL3Q6DD88 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
ATL3Q6DD88 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATL3Q6DD88 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC016027.1-202ENST00000607927 1699 ntBASIC18.8■□□□□ 0.6
ATL3Q6DD88 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC012313.10-201ENST00000623509 926 ntBASIC18.8■□□□□ 0.6
ATL3Q6DD88 FAM215A-202ENST00000632077 792 ntBASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC092919.2-201ENST00000623631 1645 ntBASIC18.8■□□□□ 0.6
ATL3Q6DD88 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ATL3Q6DD88 AC092384.3-202ENST00000564646 2873 ntBASIC18.79■□□□□ 0.6
ATL3Q6DD88 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 AC109635.5-201ENST00000533593 962 ntBASIC18.79■□□□□ 0.6
ATL3Q6DD88 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 AC117500.6-201ENST00000624871 588 ntBASIC18.79■□□□□ 0.6
ATL3Q6DD88 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.79■□□□□ 0.6
ATL3Q6DD88 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATL3Q6DD88 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 AC093724.1-201ENST00000448659 1027 ntBASIC18.78■□□□□ 0.6
ATL3Q6DD88 AL513480.1-201ENST00000451731 511 ntBASIC18.78■□□□□ 0.6
ATL3Q6DD88 AC245100.5-201ENST00000452108 331 ntBASIC18.78■□□□□ 0.6
ATL3Q6DD88 EMBP1-201ENST00000458200 901 ntBASIC18.78■□□□□ 0.6
ATL3Q6DD88 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 AC126177.1-201ENST00000547829 2218 ntBASIC18.78■□□□□ 0.6
ATL3Q6DD88 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATL3Q6DD88 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms