Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 AC022144.1-201ENST00000602255 1580 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
USP39Q53GS9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 OR8S1-201ENST00000310194 1080 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.74■□□□□ 0.27
USP39Q53GS9 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
USP39Q53GS9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
USP39Q53GS9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.74■□□□□ 0.27
USP39Q53GS9 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.74■□□□□ 0.27
USP39Q53GS9 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.74■□□□□ 0.27
USP39Q53GS9 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 AL596325.1-201ENST00000563991 1082 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 AL138918.1-201ENST00000568306 659 ntBASIC16.74■□□□□ 0.27
USP39Q53GS9 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.74■□□□□ 0.27
USP39Q53GS9 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.74■□□□□ 0.27
USP39Q53GS9 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.74■□□□□ 0.27
USP39Q53GS9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.74■□□□□ 0.27
USP39Q53GS9 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
USP39Q53GS9 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.73■□□□□ 0.27
USP39Q53GS9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
USP39Q53GS9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.73■□□□□ 0.27
USP39Q53GS9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.73■□□□□ 0.27
USP39Q53GS9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.73■□□□□ 0.27
USP39Q53GS9 MRPS18AP1-201ENST00000414458 589 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.73■□□□□ 0.27
USP39Q53GS9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.73■□□□□ 0.27
USP39Q53GS9 RN7SL692P-201ENST00000464677 288 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 KRT18P34-201ENST00000488218 1270 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.73■□□□□ 0.27
USP39Q53GS9 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
USP39Q53GS9 MPDU1-223ENST00000582151 728 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 AL359881.2-201ENST00000602973 570 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 AC106886.4-201ENST00000623557 2502 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 AC124067.4-201ENST00000519691 2379 ntBASIC16.73■□□□□ 0.27
USP39Q53GS9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
USP39Q53GS9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.73■□□□□ 0.27
USP39Q53GS9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
USP39Q53GS9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.73■□□□□ 0.27
USP39Q53GS9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
USP39Q53GS9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP39Q53GS9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.73■□□□□ 0.27
USP39Q53GS9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 EGFEM1P-202ENST00000431685 1563 ntBASIC16.72■□□□□ 0.27
USP39Q53GS9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.72■□□□□ 0.27
USP39Q53GS9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USP39Q53GS9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 AC007967.4-201ENST00000614700 386 ntBASIC16.72■□□□□ 0.27
USP39Q53GS9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.72■□□□□ 0.27
USP39Q53GS9 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
USP39Q53GS9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP39Q53GS9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms