Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL358472.5-202ENST00000641448 1267 ntBASIC17.48■□□□□ 0.39
USP41Q3LFD5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 AC244107.1-201ENST00000442033 332 ntBASIC17.47■□□□□ 0.39
USP41Q3LFD5 SPTLC1P1-201ENST00000447199 261 ntBASIC17.47■□□□□ 0.39
USP41Q3LFD5 AL079307.3-201ENST00000556114 283 ntBASIC17.47■□□□□ 0.39
USP41Q3LFD5 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 AL133215.2-201ENST00000609242 977 ntBASIC17.47■□□□□ 0.39
USP41Q3LFD5 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 AL118508.1-201ENST00000613502 2345 ntBASIC17.47■□□□□ 0.39
USP41Q3LFD5 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.47■□□□□ 0.39
USP41Q3LFD5 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP41Q3LFD5 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 GAPDHP21-201ENST00000450301 1010 ntBASIC17.46■□□□□ 0.39
USP41Q3LFD5 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 AP005018.1-201ENST00000525475 301 ntBASIC17.46■□□□□ 0.39
USP41Q3LFD5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 AC009407.1-201ENST00000568958 598 ntBASIC17.46■□□□□ 0.39
USP41Q3LFD5 SPDYE22P-201ENST00000582158 798 ntBASIC17.46■□□□□ 0.39
USP41Q3LFD5 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 AL662799.1-202ENST00000614205 422 ntBASIC17.46■□□□□ 0.39
USP41Q3LFD5 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP41Q3LFD5 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP41Q3LFD5 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.46■□□□□ 0.38
USP41Q3LFD5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP41Q3LFD5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP41Q3LFD5 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP41Q3LFD5 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 GPAA1P2-202ENST00000606848 1787 ntBASIC17.45■□□□□ 0.38
USP41Q3LFD5 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms