Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SNHG9-202ENST00000564014 471 ntBASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MKNK2P1-201ENST00000437526 628 ntBASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 AL031055.1-201ENST00000606362 631 ntBASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 AC091812.2-201ENST00000619081 385 ntBASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 CYP2T1P-202ENST00000641596 2535 ntBASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD3Q3KNS1 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC092919.2-201ENST00000623631 1645 ntBASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms