Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LIMK1P53667 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 FAM220BP-201ENST00000377689 816 ntBASIC16.23■□□□□ 0.19
LIMK1P53667 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.23■□□□□ 0.19
LIMK1P53667 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.23■□□□□ 0.19
LIMK1P53667 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.23■□□□□ 0.19
LIMK1P53667 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
LIMK1P53667 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.23■□□□□ 0.19
LIMK1P53667 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 KRT18P34-201ENST00000488218 1270 ntBASIC16.23■□□□□ 0.19
LIMK1P53667 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.23■□□□□ 0.19
LIMK1P53667 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 KRT8P44-201ENST00000441609 1350 ntBASIC16.23■□□□□ 0.19
LIMK1P53667 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIMK1P53667 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIMK1P53667 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIMK1P53667 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMK1P53667 HAUS4P1-201ENST00000406739 1145 ntBASIC16.22■□□□□ 0.19
LIMK1P53667 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 MEP1AP4-201ENST00000423244 1087 ntBASIC16.22■□□□□ 0.19
LIMK1P53667 ACTBP11-201ENST00000436287 1126 ntBASIC16.22■□□□□ 0.19
LIMK1P53667 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMK1P53667 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMK1P53667 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
LIMK1P53667 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 CROCCP2-202ENST00000412962 2773 ntBASIC16.22■□□□□ 0.19
LIMK1P53667 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 AC090340.1-201ENST00000620778 4980 ntBASIC16.22■□□□□ 0.19
LIMK1P53667 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms