Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.4■□□□□ 0.38
LHX1P48742 DUX4L27-201ENST00000554796 1261 ntBASIC17.4■□□□□ 0.38
LHX1P48742 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX1P48742 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.4■□□□□ 0.38
LHX1P48742 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX1P48742 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.4■□□□□ 0.38
LHX1P48742 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.4■□□□□ 0.38
LHX1P48742 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.4■□□□□ 0.38
LHX1P48742 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX1P48742 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX1P48742 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX1P48742 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.4■□□□□ 0.38
LHX1P48742 AL035456.1-201ENST00000456064 1369 ntBASIC17.4■□□□□ 0.38
LHX1P48742 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX1P48742 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
LHX1P48742 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LHX1P48742 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
LHX1P48742 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LHX1P48742 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.39■□□□□ 0.37
LHX1P48742 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.39■□□□□ 0.37
LHX1P48742 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 AC069120.2-201ENST00000524091 540 ntBASIC17.39■□□□□ 0.37
LHX1P48742 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.39■□□□□ 0.37
LHX1P48742 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.39■□□□□ 0.37
LHX1P48742 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.39■□□□□ 0.37
LHX1P48742 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.39■□□□□ 0.37
LHX1P48742 AL365330.1-201ENST00000607459 531 ntBASIC17.39■□□□□ 0.37
LHX1P48742 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LHX1P48742 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 AC011676.5-201ENST00000624864 2660 ntBASIC17.39■□□□□ 0.37
LHX1P48742 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX1P48742 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LHX1P48742 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.39■□□□□ 0.37
LHX1P48742 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LHX1P48742 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX1P48742 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
LHX1P48742 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 MIR943-201ENST00000401286 94 ntBASIC17.38■□□□□ 0.37
LHX1P48742 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.38■□□□□ 0.37
LHX1P48742 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 HMGN1P19-201ENST00000436976 333 ntBASIC17.38■□□□□ 0.37
LHX1P48742 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.38■□□□□ 0.37
LHX1P48742 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.38■□□□□ 0.37
LHX1P48742 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 AC061975.2-201ENST00000581722 295 ntBASIC17.38■□□□□ 0.37
LHX1P48742 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX1P48742 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX1P48742 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LHX1P48742 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX1P48742 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.37■□□□□ 0.37
LHX1P48742 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.37■□□□□ 0.37
LHX1P48742 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.37■□□□□ 0.37
LHX1P48742 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.37■□□□□ 0.37
LHX1P48742 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 ME2P1-201ENST00000426028 1970 ntBASIC17.37■□□□□ 0.37
LHX1P48742 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.37■□□□□ 0.37
LHX1P48742 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.37■□□□□ 0.37
LHX1P48742 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LHX1P48742 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LHX1P48742 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LHX1P48742 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms